Drosophila Core Promoter Database - TATA
& DPE-containing Promoters
Created by Alan K. Kutach and Scott Iyama in the Laboratory of
James T. Kadonaga.
TATA boxes (any sequence upstream of the initiator with
5 of 6 nucleotides conforming to the consensus TATAAA) are marked
by green type.
The Downstream Promoter
Elements (DPE) (any 6 nucleotide sequence
at exactly +28 to +33 with 5 of 6 nucleotides conforming to the
DPE functional range set A/G/T - C/G - A/T - C/T - A/C/G - C/T)
are marked by red type.
The initiator is marked by blue type. Some promoters have overlapping
consensus initiator elements of which only one is appropriately
positioned relative to the DPE. In such cases, we have marked
both initiators blue and placed the DPE paired initiator under
the +1 position.
The name of each promoter and the reference
for the transcription start site information is shown the right.
To see a separate list of promoters with a TATA, but no DPE,
click here.
To see a separate list of promoters with a DPE, but no TATA,
click here.
To see a separate list of promoters with
no TATA or DPE, click here.
Click here to return to the full DCPD listing.
_-45__________________________________________+1___________________________+30______________
AACTTATGTAATCATATAGATTCTATAATAAACAAAGAAACAAAACTAGTTGTAAAACAAACACGATTCCTGTGTGTCATTGCGGGATATGG
74F EMBO
3:289
GCTAAGCGGGCTTTAATAAAACGGGCTGCGGGACCAGTTTTCATATCACTACCGTTTGAGTTCTTGTGCTGTGTGGATACTCCTCCCGACAC
Act5C distal
G&D 1:1161
CGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCATAACGAATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTAGT
Act79B JMB 163:533
GCAGCAGCGACACGGGCCGAAAATAAAAGCGTTAACCGCTCTCCTCCAGTGCAGCAGCAGCAGCGGACCCAGCCAGTAGCCAGCAGCTAATC
ald JBC
267:3959
AGCAGTGGGGTCCACTATATAAGGAGCGGCTCTGAGTAGTTCCGACCAGAGTGAAACTGAACTTCCATCTGGAATCATCATGTTTCTGGCCA
Amy NAR
14:8399
AGGCCCTGATACCTATAAATAGCCTGAACGGAACGGGGAAGGGCATCAGAACAGAGCCAGCGCTGAAGCAAGGAGCATCGTCACACAATAAC
ASC T5 Cell 50:415
GCTGCTGTTCGCCTATAAAAGCTCTCGCCTTTTGTATCGCAGTCATCAGTCGCTCAGACCTCACTGCAATATCAATATCTTTAGCTTCTCCT
CecA1 EMBO 9:217
AAGCTGATTCGCCTATAAAAGCTCTCGGCGTTCCTGGTGCAATCAACAGTCGATCACTTTCCATTGCAACAGCAACATCAGAGCTATAGCTA
CecA2 EMBO 9:217
CATCTGTTGGTATCGCTATATAAGCTCAATCTCTTCGATGTCCAATCATCAGTCGCACAGTTCTCACTGCAACAGCTTAAGCTTTCTTTCAA
CecB EMBO 9:217
GGATTTGCGCTACACATAAAATAAACGGACCACTGCCGGTGCCTTTCAGTTAGTCGTTGGAATCCCAGCGGAAAGGTGCTCGGATCGGTAAA
cytb5 NAR
17:6349
CGGCACGTGCAGCTATAAAAGCAGCGGTAACCGGAGACGAATGCAACATTTCGAACGCAATCGTCGTGCAGTCAACATCTCAGGATAACCTC
E(spl)m7 EMBO 8:203
ATAGGAATTTCGGGTATAAAAGCTGCAGCGAGCGGACTGAAAAATGCAGTTGCCTGCTGGTCTGTGTTGCAGCAAGTTAAATCCATCTGAGC
fbp1 JMB 214:359
AGCTTTTCGTCAGTTTAAAAAGACTGGCGCCTGCTGGTCAGAAGCTGAGTCGGTAACGGTCTGCGTCTGCGCGCAGTTCGAACAAGTTGAGA
Gld Genetics 120:475
TCTACCTGAGCGATATATAAACTAATGCCTGTTGCAATTGTTCAGTCAGTCACGAGTTTGTTACCACTGCGACAACACAACAGAAGCAGCAC
hb (zyg)
Nat 327:383
CAGCAAGCGGTTGTATAAATATCCGGCACTTTCGTGCAACCGGCGTCAGTTGAATTCAAAAAGCCAAAGCGATAACAGCTAAAGCGAAAGTA
hsp23 NAR 9:1627
AAAGCTCCAGCGGGTATAAAAGCAGCGTCGCTTGACGAACAGAGCACAGATCGAATTCAAAAATCGAGCAGTGAACAACTCAAAGCAACTTT
hsp26 NAR 9:1627
TCTTTAATCTTGAACCTCATAAATGGATCATCTGCGCCCAGCTGGCAAGTCAGTTGTTATTCAGCTGGCGAACCGGTTGAAATTCGTGCTCC
hsp67bhs JMB 200:47
GGAATCTGTGGCTATATAAGCAGACCCGTGGGCGTCGGTAAGGCAACAGTCTTTAGGCATTGGATCCATCAAGTGCATCCGATCCGGAGCAG
lsp1 alpha
JMB 189:1
GGGACTCTTGGGTATAAAAGCAGCCAGGTGGACGGCAGTGAGGCAACAGTCTTTAGGCATTGGATCCACTGGGTGCATCTGATCCGGAGCAG
lsp1 beta
JMB 189:1
CGCTCTCTCGCGCTTTAAAAGCCGCATACGCCCCGTTGGCTGGCATCAGTGTTAGCTTTTCAGAGCTTTAGTGAAGATCCCGCAGGACCCGA
Mp20 JCB
108:521
CGAGCATTGCGAAAACTATAAAAGCCACGCGGCAGAATGCAGACATTGCAGGTTTCCAACGACCAATCGCCGCGACTAGTCCGCCCCAGTGA
ninaE Genetics 116:565
TGCGAGTGCACGGGGGCTTATAGACCGGAGCTTGCGATGCGAGCACTAGTGTTCGTGCGAATTTAGAGCCAGAAGGTCGACAACGCGTTCGT
period Nat 326:42
CCGCTTAACAGTGCCATATATAGATTGTAACATTAGGAGCTCAAATCATTGTTGGAACACAAACCACAAAGAACACACGAAACATGAGCGGG
Pgd Gene 109:177
CGAAACGGTATTAATTTAGTAATTTTCATAGAACCCATGCTGCGGTCACACTGCGGCATTTCCTCAAAAAAGCATCATCATTGCCTGGCGAA
Pros28.1 p1 EJB 205:1043
GCACAGCGAGCACTTATAAAGGCCGGCTGCCTTGCCTTTCGAAAGTCAGTTGCGTGCGAGCCGCGAGCGCGAGATCATCAAACTGAGAAAGT
rhomboid A.K.& J.K,unpub.
GTATGAATTATCCAGAAATATTTACAAATGTACGACCCACAGTAGGCACTCTTTATGGGTGATCGAATTTTTGTGCTGCCAGAACTATTTAA
rotund Gene 168:135
CGCGTCCGGAGCATATTTAAAGTAGTCGGCCACCAATGGAGGGCAGCAGAAGACAGCAGACAGTCCAAGCGGGAGCACACCAGAAGCCGAAG
s38 EMBO 6:1045
TTCGGCATGGCAGCGAATAAAAGGAAGTGCCGAAGACGCGCCGCTTCAGTCCTTCGAAGAACGCCGCGCTGAAAACATCCTTCCATTGGAAG
sca G&D 4:1848
Reference key:
DCB is DNA Cellular Biology
Dev Bio is Developmental Biology
EJB is European Journal of Biochemistry
G&D is Genes & Development
JBC is Journal of Biological Chemistry
JCB is Journal of Cell Biology
JMB is Journal of Molecular Biology
JM Evol is Journal of Molecular Evolution
JN is Journal of Neurosciences
MCB is Molecular and Cellular Biology
Mech Dev is Mechanisms of Development
M&GG is Molecular and General Genetics
NAR is Nucleic Acid Resolutions
Nat is Nature