Drosophila Core Promoter Database - DPE-containing
Promoters
Created by Alan K. Kutach and Scott Iyama in the Laboratory of
James T. Kadonaga.
The Downstream Promoter
Elements (DPE) (any 6 nucleotide sequence
at exactly +28 to +33 with 5 of 6 nucleotides conforming to the
consensus A/G/T - C/G - A/T - C/T - A/C/G - C/T) are marked by
red type.
The initiator is marked by blue type. Some promoters have overlapping
consensus initiator elements of which only one is appropriately
positioned relative to the DPE. In such cases, we have marked
both initiators blue and placed the DPE-paired initiator under
the +1 position.
The name of each promoter and the reference
for the transcription start site information is shown the right.
To see a separate list of promoters with a TATA, but no DPE,
click here.
To see a separate list of promoters with a TATA and a DPE, click here.
To see a separate list of promoters with no TATA or DPE, click here.
Click here to return to the full DCPD listing.
_-45__________________________________________+1
__________________________+30______________
ATGGGAGCGGTATGCTTAAATAGGGGCACCTTTTAATCCCTCTGGCCATTGGCAATCGATCCATTTAGTGGGAGCCATGTTCAAGTTGCTGG
44L JMB 166:101
TTTCCACACGATCGTGCTGCCTCCCAATAAACCCGGTGCAGTGAGTCAGTGTGTTGTGTGCCCCAGTCGCGAGCGGACGATCCGTGGAGATC
Abdb EMBO 7:3223
TGGGATTTTCACATGTATATGCTTTGAATTGAATGCTTTATGGGTTTAGTTTGATAGGAGTCGTAAAGAAATCAACATCACACAACAAAGCA
Antp p1 MCB 6(12):4676
AACATGCGATGTTTACGAGCCTGGCTCATTGTGATTCACTGGCGTTCAGTTGTGAATGAATGGACGTGCCAAATAGACGTGCCGCCGCCGCT
Antp p2 MCB 6(12):4676
GAGTTATCGGGACAGCAGCAGGCCATCGCTAGTTGGGTTTCGTCGCCATATACACAGTTTTTCTCGAGCAGACAATTCGCTGTTATTTTGTT
arm E16 G&D 3:96
GCGGTGTTGCAAGTGCCTTGCTTTCGTTGCGCTCTCTCGCATCTGTGATTCTGTTCCGTTTAAACGAGCGTGCTGGTCGGTCGCATTTTCCT
arm E9 G&D 3:96
AAGTCACCAGAACATCGTCGACGGACTCGAGTTTTGTTCCGCCGATCAGTTGTGTCTTGTGCGTTGTGCGGTGAAGTTGCGCCTTCGTTCTG
b3 Tubulin M&GG 211:8
TTCCACTGCTTTGAGTTTTTTATCAGTCGAGTCTTGCTCTACGTTTCAGTACGTGTTCGACCTGCATACTGAGTTGACGTCGCCACGCACGG
cad Cell 48:465
GCAGAAAAATATATCGTTAGTCAAGGCGTTGCCACATCGTCAGTTCTAGAGCGACGTTGCCATCGTAGTTTCGATGCCGTAATCGAGTACTT
Cf2 Science 257: 1946
CTAACATTTACGACGTGTTGACCGGGAAAAAATCAAAAGAAGCCAGCAATTGCTTTTAAACCACGAACCGCTGAACAAGTACGGAGTTTGTA
CycA p1
Gene 121:343
GAGTGGCGAAACAGGTTCGCTCGCACGGAGAGTTATCGCCAGCGAGCATAACAAAAAATCGGCTCGAATGGAACGGTTCGTGTTCGCAGCGC
Dfd EMBO 6:767
ATATTATACTTTTAATACTCTATCGGGTACAATCGATATCCGGCGATAGTCGTCATGGATCAGGATCACTTAAAGAATGCTAAAAACGCCAC
dhod Gene124:191
TATCGTAGCTCTGTTATCGATATGTTCCCGCCATTCCCGCTTTGATCATCCTCCATCCCTGGTCACAAAACAATTTTTGCAAACTGCAGCAC
dna pol alpha NAR 19:4991
CAGTGCAGCGCAGTGCCTGTGTGCAAAAATACGCTTGTTCGCCGTTTAGTTGTCTTTTGACTGCTGTAACGGACAGTCGCAAATTTTGCCCC
E74A Cell 61:85
ACACCAGCGGCAGCGGCAGCAACGTCGTGCCGTCGATTCAGTCGTTCAGTCGGCGTAAGCGAGTCGAGCGAGCGAGCCCCATTCAGTCCGGC
E74B p1b
Cell 61:85
GCGCGTAACAAACACTCGCAGCGGTTTTTGTGCTGACTTTAGATTTTAGTTTTGCTGATACCGTAAGAGATAAATGACGTGCCGCGGCGAGC
E74B p2
Cell 61:85
GCCGAAAAAACTGAACAAGATCCGCCGCGAATGTTGATTTTCCTTTCATTGACTAACTGCCACTCGCAGCGCGCAGATCGTCGGCTCCGCTT
E75A G&D
4:204
CTCGTGTTGCTCTGGGTCGTTTTGTATTGCTGGTGGACGCTGCTTTCATTCGCAAATTGCTCGTCGTTGGCAGCGGTTGTGCAGAGCAAGAA
E75B G&D
4:204
TGTGTCAAACGAGGCTTCCTGTGCTGAGCTCTGCCGAACGCTCGTTCACTTTGTTCGAATCCGTCGCCGCTTAGACTTCGTGATTTCTCATN
EF-1alpha F1
NAR 16:3175
CGTTAACTCTCCCCGACGTCGGCGCTGCGATTCCGAAGTAGTCAACTAATTCAGTCGTTGCGCTCGATGTGAACAGACGTGCGTGTCGGAAC
engrailed G&D 2:68
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGATTTCAATTCGATCGTCGACGTGTGAAGACGTTTTTATCGTGCT F
MCB 11:5171
CTCCGTCGTCGCTGGCTGCTCGTCGCTCGGACAGCGCTGGAGCTCTCATTCCGCCATAGCTGCTGGAGCTGCTCGGTTGTTCGCGTTCGGTG
Fsh JBC 272:1002
AATTTCTTAATACATATTTAAGTTGGGCAAGCAATATTGGTTTATGCAGTCGTAGAAGTGGGTTCATCGGTTATGGTCACAGCAGCTGGCGG
G42 G&D 3:96
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCGCGATCGAACACTCAACGAGTGCAGACGTGCCTACGGACCG
G NAR 16:4041
TCTTTGAACTTCTAATCATAATACGAACCGATGTAATCACCTTAGTCATAAGCATCATTGATTTCAAATCGTACAGTCACAATTCTTTTCAC
gdlm G&D 3:232
GTCGATTTTGGGCCGAGGTGGCTCGAACCGAACTGCAACTGACAATTAGTCGCCGTCTTATGCTCCTCGCCAAAAGTCGCTTCTTGCCCCGC
glass Nat 340:531
GAGTCGTTTCGGTCTTTTAATCGCACTGCAGCCAGAACCTGCTGCTCATTCGCCTGCCGTATTTCGTAGCGTGCGGTTCTATCGCTCCGCTT
hairy p2 EMBO 8:3095
AGGAGATTTTCAGCTATTAGAAGAGCCCGCTGAGCGTGAGTTTGGTCAGTTGTGCTCCGAGTCCCGAAAACGAAAGTCGCCAGCATTGACAG
hb (mat)
Nat 327:383
GCGCGAGCCATTTTTAACAGAAAAAAAGTGTTCTCAGTGAAAAAAAGATGTCTGATTCTGCAGTTGCAACGTCCGCTTCCCCAGTGGCTGCC
histone H1
NAR 13:5563
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTACCACTTCAACCTCCGAAGAGATAAGTCGTGCCTCTCAGTCT
I Cell 47:1007
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTCACATGGGAGATGAGCAATCGAGTGGACGTGTTCACAGAAGT
jockey Cell 54:685
GTGGAAACATACATTAGTGGGAAAAACTGATTGTTATAGTTGTTCACACTCCTTCGACAGCACTGGTATCGAAACGTTATCGCAATCGATTC
k10 G&D 2:891
ACCAGCGGTTGTGCGGTCTGAAAGAAACCGGGTTCGGGCCAGTAATCAGTCACGACTTGGTAAGCGCGCAGGCAGCACGTCGTCGTCGTCAT
labial EMBO 7:2569
CTCAACGAGCGATGATCGTTGGGCTTCGCATTCATTCCTCGAGAGTCAGTTGAGCATTGGACGTCCTCGTTAACGGTTGCCTGCGTCTTCTG
laminin b2 DCB 10:451
CAATACCTGTAGACCCCAAAATGCGGTCGATGACAGTTACCCGCTTCAGTTAATATTTTGTGTTGGTCAACCACGCATCGGGAATCGGAAAT
mex1 Dev Bio 143:206
TAAATGCGATCATAACGCTTAGGCCAAGTGCTGGTTGGATTCTTTACAGTCTAGAGAATACGTTTCCACAATGAACTACTTCGCGGTGATCT
Mst26Ab G&D
2:1063
TTATCGATACCCGATACACAGTTTGTTTGTGTCTCCCGGCGTGCCATAACTAACTATCGGGCATTTCTACTTGTCATCATTGAGCTCAGCGG
Pros35 EJB 205:1043
ATTAAGGTGTACGAAATGTGCACCAATGTCACAGCAGATACGTGCGCATGTTTAAAAAGCGTAGACTCCCAATTGGACGGTTCTTATTGGAG
ral Gene
124:263
TAACTTGACTTAAAGAATTTTATCTATTCCTTGGCCAATTTTTCTGTATTTTTTTCGTTTGATGACTTAGCCTTAGTGATGGGCGAAAGTCG
ras2 p1 Oncogene 3:137
CGGTCTTTTTCAACCTGCCGCTCGCAGCCAACAGACCTCCGCCGTTTCTTTTTTTTTCTGCGTTGCGTGCAAACAGACCGACAATATGAAGG
RpS6 p3 MCB 13:2524
CGGTATATTTTAGTATGTTTTTCACACAACCACCCTGGTCACACGGCATCCTTCTTTTTCTTTCGTTTCCGGCGAGGTATGTGCAGAAATTT
RpS17 Gene
79:298
AGTGACAGGTACTAAAGAATACCCTATGGTTTCCAATCCTCCCCAGCAACTCGTCCAATATGGCCTCTACGGACTGTTACCTCGCACTGGAG
rudimentary JMB 189:25
TATCTGTGTTTTTTATTGATGCTCAGAAATTTGAATTATGCCCGAGCAGTCAAAGTGAGACATTGGCGCTTCGTGCACGTATCCGCGGATAC
Scr EMBO 8:219
AGCTGGGGGGTTGGACTTGGACTTGGACTTGGAGCTTGGGGCTTGGTTAAAAAGCCGCCGCTCGCCGGCAAATCAGTTCTGCTGCGATCGCG
sev p2 Cell 54:299
GCGTGTAATCGACTATCTGGAATCGAATAGACGACAATTGGGGTTCCATCTCTGCAACCGACGCGGACATTAGAAGAAACTCAGTATAGTAA
sina Cell 63:561
CCGCGAATTCAGAAGTCCACTAGTGTAAGGTTTAAAATATTTGAATCAGTTGTGAATCGGCTATTCGAGCGTGTGGTTATTAGAGCTCTCAA
Sodh-1 JBC 273:34293
TGTCAAAAACTCAAAGAAGAAGACGATGACTTTGAAGTCTACAAGTCATATTTCTGTGATCAAGTGAACTGGCAACATGTCGAGCTCGTAAG
Ste Genetics 124:303
TGTTCTTTGCGAAAAATATCGATGTACTGGTATTTTTATGTTTCCACACCTCTAGTTCGTTTAAGTCGATCTGTTGAACTGTTAACAACACA
su(s) Genetics 126:1071
CATTCAAACATCGATTTGTGCGCCTTGCCAGCTCTAAAACCAGCAATACTTCTCATTTGTTGTCGGTTGTGAAAAGTTGTTAAATGTGCTGT
TopoII JMB
205:1
TAATGTAATTAGTGGAATATAGCGACCCGTGGCTGCCACTTTTCAGCAGTGCAACGCGGCTAATTGGAGGCGGAACATCGCCACGATGGAAC
trp Neuron
2:1313
NNGTAGCCTATTTGTGAACATTCGGTGTAGTAATCCAAGCCAGGTTCAGTTCACCTCAGTATCAGCTAGCACGTACACGACTAAAATCTAAA
Tub85d Chromosoma 95:387
NNNNNNNAAAATGTCAATTTGAGCAATGGCCGGAAGGATCCTGCGTCAGTTGCGTTCCGTAAGTGCGTGCGAGCAGATCGATCCAGCAAAAC
twist EMBO 7:2183
GTTGAGTCGGCAGAGCAAAGTCAAAACACTGGCAACTGCGATTTGGTGCCACATTCGTTCGATGGCAACGGATTGGATAACAGGCGCGCGCT
Ultrabithorax EMBO 6:1775
TTGAATTGGAAAACAATTTNACGGTTTTTTTGGGTTNGTTTTTAGCCAGTTTGCGCTGACAAACGGCAAGAGTAGGTTCAAGTTCAGAAGTC
windbeutel G&D 12:120
Reference key:
DCB is DNA Cellular Biology
Dev Bio is Developmental Biology
EJB is European Journal of Biochemistry
G&D is Genes & Development
JBC is Journal of Biological Chemistry
JCB is Journal of Cell Biology
JMB is Journal of Molecular Biology
JM Evol is Journal of Molecular Evolution
JN is Journal of Neurosciences
MCB is Molecular and Cellular Biology
Mech Dev is Mechanisms of Development
M&GG is Molecular and General Genetics
NAR is Nucleic Acid Resolutions
Nat is Nature