Drosophila Core Promoter Database - Initiator-only
Promoters
Created by Alan K. Kutach and Scott Iyama in the Laboratory of
James T. Kadonaga.
Promoters that harbor no consensus DPE or TATA elements in addition to the initiator.
The initiator is marked by blue type.
The name of each promoter and the reference
for the transcription start site information is shown the right.
To see a separate list of promoters with a TATA, but no DPE,
click here.
To see a separate list of promoters with a DPE, but no TATA,
click here.
To see a separate list of promoters with a TATA and a DPE, click here.
Click here to return
to the full DCPD listing.
_-45__________________________________________+1 __________________________+30______________
ATATTTGATTGGCCAGCCCTGCGTTTGCGGTTTTTTTTTGTTTTTTTATTTCCTGTATTTTTTTTGGGGGGGAAAAATTGCAGTTCCACGGA
4f-rnp Gene 204:267
AAAAAACAGAGCAGGCGAGCGTAAGCAAGAGAGAGAGGTGAAGCCAGAGGCGGAGGCGCAAGACAAAGTGCATTTTCAGGGCGTGTTTTTGA
abl p2 Oncogene 3:33
TAATAGTCGCTCAAAAGCTGTCGAGAGAGAGGGAGAGAAAAGAGAGAGTGAAAGCATAGTCCCGCTATTTTGCCGAGAGAAATAAAGAGCAG
ace JMB 210:15
AGCGATTGAAAAACGCAGTTAACTGGCATTCAACATTCACCAGCCACTTTCAGTCGGTTTATTCCAGTCATTCCTTTCAAACCGTGCGGTCG
Act5C proximal G&D 1:1161
CCCACGAGAGAACAGTATTTAAGGAGCTGCGAAGGTCCAAGTCACCGATTATTGTCTCAGTGCAGTTGTCAGTTGCAGTTCAGCAGACGGGC
Adh1 (adult) Cell 33:125
AAATAGCGTTTCGAAATATTATCGATATCTCGGTCGTATGTTACTGTGCCCCCAAAAAACACATCACCAGCCAAGTGATAACTGTAAAGATT
cad (maternal) Cell 48:465
CGACTTTCGCCCATCACTAAGGCTAAGTCATCAAACGAAAAAAATACAGAAAAATTGGCCAAGGAATAGATAAAATTCTTTAAGTCAAGTTA
cs1 p2 Oncogene 3:137
CTCGCACAAACCACCACCGCCGCTTCGACGGGCGATTCGATGGATTCATTTCCAGTTACGTACTCGTCGCAGTCGCGTCGTCGTTGCCTCTC
cTm MCB 8:3591
ACTGTCGGCAAATGTCGATAGACGCCACGACCTATCGATAGCTGGACAGTGTCATCTCTAACATTTACGACGTGTTGACCGGGAAAAAATCA
CycA p2 Gene 121:343
TCGAGGGCGGCCGGTAAGGGGGCGGTTCCGGCCACAGCCAGACCCTTGTCCTTGGCCATCATTTTGCAGAGCGCATGGAACTAAAAACTGAT
D-Ggamma1 Gene 148:315
GCCTTGATCAGCTGTTTGAATTTTATAGCTTGGAAGATAATTTTCAAGCTTATGCTTTCTCAGTAAGGATTAAGGATGCTTCGATTCAATTT
Dhfr JBC 269:15179
TTTTCGCAACACCAGCGGCAGCGGCAGCAACGTCGTGCCGTCGATTCAGTCGTTCAGTCGGCGTAAGCGAGTCGAGCGAGCGAGCCCCATTC
E74B p1a Cell 61:85
NGGAATCAGTTCAGCTCCGTTCACCTCAGCATCGTTGCTTTTTCGGTCTTTCCGTTTTGTGATTTCGAGGTAAGTGCACGCAGAGCTCCCGN
EF-1alpha F2 NAR 16:3175
CGAGTAGCGCACACTTGGTGGTGTTGCCGGGCTTACCGGATTTATTCAGACATCGAACGTCGTCGAGAGCACACGTCTATATTCTCCGTCTT
ems EMBO 11:2247
TGTCATGCGCAGGGATATTTATGCGCTATAACGGCGAGCGTGTGCCGAGGGCTCTCTGATTTTGCTATATATGCAGGATCTGCCGCAGGACC
ftz Nat 310:25
CTGCGGCGGTTCGCCGCGCTTCAGTCAGTCAGGGAACGATCGTGCTTATCTTCATTACTACTACCGCTTCCACCGAGGCTTCGCGACTCCGT
G6pd Gene 63:261
CATTCTCCTAATTTGCGAAAAAAGCTCCGGGAAAAGGAAAAAGCGGCAGTCGTAATAGCGAACTGAAACTGAACGAGAGTAAAAGTTAAAAG
Gapdh1 JBC 260:8220
TTGTTTTGCTTATATTAGCATGTGTGGAGTGCAAACCAAGAATCAGTAGTCGCCGCGGTTTCGACGTGTCAGTTTGCAGTACAATTACAATT
Gpdh PNAS 86:5021
TGATATTTGCTAGCATGCTGACTGGCGCCGTGGATTTTGACGTTCTTAGTTGACGGTCACACAGCGCACCGAGCTGCGTTTTTCGTTGATAA
Hairless p1 G&D 6:1752
ACATTGGCCAGTGGAAACATGATATTTGCTAGCATGCTGACTGGCGCCGTGGATTTTGACGTTCTTAGTTGACGGTCACACAGCGCACCGAG
Hairless p2 G&D 6:1752
CGCTCGCGTCTCGCAGCGGCGATTTAGCCTACGAACCTGTCGATCAATCGTCAGTCTTCCGCCGAGAGCCCAGCGATAAGGTAGTCCCGCTA
hairy p1 EMBO 8:3095
CTAAAAGGCCTAGGGTTCTTGAAAGCACCCTCGTCGTACTCGTACTTATACTCGCATTCGTATTCGCTGCCGTACTCGTACTCGCACTCGAA
hedgehog Cell 71:33
CCCTGGCGTTCCGCTGACGGCGTCTTTTCCCCGAAAAAATTTCAAGTAGTCGAAACCGAATTCCGTAGAAACAACTCGCACGCTCCGGTTTC
H2AvD JM Evol 30:449
TCAGTGGTAGGTGAGAGCAAAGAGCAATAAATAGCCGGAAAACAGAGAGTGAAAATCAGTTTCAAAACAAAAGTACAAGGAATAACAGCACA
hsc3 Gene 128:155
CTAGTTTGCTTTCATTTACTATGTTTTCAAACCACCTTGTGCTGAAGGGCCATTGAAATATTTAAAGTTTTATACACCACAATTCGTTGAAG
hsc5 Gene 128:155
GCAGAGCTGGCTCGGTTCTGTTCGGTTCGCTTGCTTTTTTTTGACTCAGTTGCGATCGGACTGCGTGCCGTTACAGTAGGCGAAATCGGAGG
htl p1 Gene 139:215
ATCACCACTAGAATTGGAATCGGAATTGGCATTGGGCATATTCAGTACATCGGACTACGCGGACCAATTTGGAACAGTTTTTCGCTTGGCTC
htl p2 Gene 139:215
TTAATAGTATCGATACATAAGGTGAACGAGAATAAAAGTATCTGGTCACATTGCTGGACTAAAGCAGGCTTTTTGGAAAATTTGCCGGTTGG janus
MCB 9:2526
GTCCAGCAGTTTTTAGGCTTTTATCTAGAGCGGCGTTTGGTCACACCAGGCATGCCGGAAAGTTATCGATTAGTCTCTGAAACCATCGCAAC
lamin Genomics 8:217
CCTAAAATCCAAAACATCGGTATGTGGTCCACCACTAACTATCGAATGGCTGCTCGATATCATCAGCTGTCCCAACCATCAGGTGGCAACTC
lrr47 Gene 211:235
AGAAGAGCTCCTCCGAGCTCTTAAAACATCATTGTCTTGGCGATAAAATCAGCCAGAGATTCAGTGTGCTCTGACGGCTCGACTCGATTAGA
Mlc2 MCB 5:3058
TTCTCAACATTTATTTTTTTTTTGAATGTGTGTGCAACAACGCACGTAAAATCGCGCTGCCAACAGGATATACAAACAAATCAATTACACAG
not p2 MCB 6:3094
GGAGATGCAACCCTAGCAGCTCACCGACAAAATGACCTTGCGCTGACATTGCCGCACAGCAGTTGAGGACGAAGAAGATTCGCGGAATCAGT
Pgk p1 M&GG 235:213
CCCTAGCAGCTCACCGACAAAATGACCTTGCGCTGACATTGCCGCACAGCAGTTGAGGACGAAGAAGATTCGCGGAATCAGTGGTATCGCAA
Pgk p2 M&GG 235:213
CTTGCGCTGACATTGCCGCACAGCAGTTGAGGACGAAGAAGATTCGCGGAATCAGTGGTATCGCAATCCGGAGTTTGCTAGCACGCACAGGA Pgk p3
M&GG 235:213
GTGCCTTTGTACGCCTCTTTGCCCGTCCAGCGCAGTGTGATAACCAGAAACCAAAGTGCCTGTGCCCAAGAAGTGCAGTGGAATCGGATGTG
Pp2A Cell 72:621
TTCATAGAACCCATGCTGCGGTCACACTGCGGCATTTCCTCAAAAAAGCATCATCATTGCCTGGCGAATTCGAGAAGGAAAAAGCTATAAGT
Pros28.1 p3 EJB 205:1043
ATAGTTGATATCGATATTACTGTCTAGCAGAGACGCGCACCCGTCTTCTCAGTTAACCGAGAACGGTCACGCTGCTGCTGTCGAGGAAGGAA
ras2 p2 Oncogene 3:137
ATTAATCGATCAGTGCTGGTAAGTCGCCAAAGTAGTCTGTCAGTGTTAGCAACTCAACGTGTTACTTGCTGTGCTTTCGACAGCGTGGTGTC
rbp9 p1 JN 13:1045
AGCGCTGTCACGGGTCCTGGCTGCAGTTATCCTGGCGGCAATCGAACACTTTAATCATTTAGGTCTTGCACTCTCCTGCAGCAAGTTGTGTT
rbp9 p2 JN 13:1045
AAATACTAAAAGTGGTGAGTTCGATAGAGCCGCGTAAAAATATTTTCATTATCGATAACCGAAGTATTATTAATCTTTGCCAAAGACCAGCT
ref(2)p EMBO 8:3437
TTTCCAGTGGGTCAGTGCACTAATGGCTACACTTGTTGTGTCCTACCAGCTTCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTG
rp49 NAR 12:5495
ATTTGTTAAATTACTAACTAATACTAATAGATATATTTATATAAAAGATATAGCTAAAAAACGTCAGTCTGGCAACCCTGCTACAACGACCG
rp215 M&GG 215:266
CGGCGGTACAGCTGGTCGATCTGTCATCTCTACTTCCTCCTATCGGTCTTTTTCAACCTGCCGCTCGCAGCCAACAGACCTCCGCCGTTTCT
RpS6 p1 MCB 13:2524
TCTACTTCCTCCTATCGGTCTTTTTCAACCTGCCGCTCGCAGCCAACAGACCTCCGCCGTTTCTTTTTTTTTCTGCGTTGCGTGCAAACAGA
RpS6 p2 MCB 13:2524
AGTGCGTTCCCCAACACTCGAAGCCGCCACGGCCACACTGCACCCTCAGTTTCGTGCAACTTTTTGTACGCAAATAAGAAAAACATTAAATT
SdhB JBC 270:30781
GGTATCGTATGGTATCGTATCGCATCGCATCGCTTCGGTTCGGTTTCAGTTCCGTGCTCAAGTTCTCCAGCTGGGGGGTTGGACTTGGACTT
sev p1 Cell 54:299
TGAGACTGCACTTTGTTGTTTTCGTTTTTGGCCAGACGTGAAATTCGATTTTTATGACTTTTGAAAGCGTGACTAAGACGTGATTTATGATG
sob Genetics 144:171
GCATATCGGTCAGATCGAATACTGAATTCAGTGCTAAATCGGCGTTCAAAGCGAACGGTTGTGTGACGCAAAGTGAAAATATTAAAAACCAA
Sodh-2 JBC 273:34293
TTCGCTAAATATCGATTACTCGGTCCAGCTGTCATCGTGCCATCCCTATTTCAATTGGGTTGCTTGCGTGGAAAATAGCTTTCTAGCTCATT
Srp19 gene 203:59
ATAGCTTCCGATATTCATCATTTTGCCAACTCTATTAAATTTCATACACAATTTAAAAGATTGTAAACAAACGCCGCACGAAACGGAATCGC
sryD JMB
186:149
CCAGCAAAGAATTGCGCACACAGTCCAACGCAACGCAACGCATACACATTTATCCGCCCGTTTGGATTTGGAAGCACAGTGAGAAGGTAAGG
Ssrp2 Gene 184:285
AGACCCAGCCAGCTATCGATAGTTGCGGCAAAATGCAGCGCTGACTTTGCCATTCTCACAAAACGAGCCACAGGTACAACGACGAACGCGGT
Tbp Gene 153:203
TTCCGATTTCTGTGAAGCAAAAACCTAAGCAGCTATCGAGTTATCGGGCAAAGTCACATCACCAGTTGATGTGAGTATTAAAAAAATATATA
Tf2b Gene153:203
NCTAAGGGTGATCGACTGCTCGATGAATGGATTTGGTCTGCAGGACTATTAAAACGCCGGCGGTCCTCACAGCAGACAACACAACCCATCGT
tll Mech Dev 40:47
GTGGGATCTTGGGGTCGCTTTCTGGGCTAAGCAACTTGGTCAGCATCAGTGTTCTCGGGGTTTCGACAGCGTATAGTGTGTTTGAAACGCTA
TmI JBC 261:817
GAAGGCCACGAGGCATCGAACGGTCAACATATTGAATAAATATTTTCAGTTGAACATCACAATCCGTTCAAGTCGCGGATAACTCCGAATAA
TmII MCB 8:3591
TTGACTGGCAGTTTGGAAAAAAGGTTCAACTGTCATAGGGCCCTTTCATTTGGATTTGCCCCCTCAGCCGATTCAGCTGGTGCTCTTGCCAN
tra2 G&D 4:789
ACAACGCCGCATAAGGGTTAAAGTGCCAATCGATAACGCACGTCCTCACCTATCGCCACCCCTGTCGAAGCGTGCGTCTTTCTAAACGCAGA
tra2s G&D 4:789
CGTAAGTAGTATATTTAATTACTAATCAGTATTTCATGCGGAATTCTTCCGCTTAATTCATAGACCGCGCGGGGGTCACACTTGCTACTCAA
u170k MCB 10:2492
CTCTGTTATCGGTTCGCTGGGGTCTCATCTCCGGTCCGCTGGCGGAGATCAGTTCGCCAGCATCCGCCGCTCGAGGAGTCACGATCTGATCT vermillion
MCB 10:1423
TCTTTCGCCACCGTTTGTAGCGTTACCTAGCGTCAATGTCCGCCTTCAGTTGCACTTTGTCAGCGGTTTCGTGACGAAGCTCCAAGCGGTTT
white Genetics 131:79 *
TATTTTCCGCGCGAGATATTTATGGCAGTCCTGGGCAAAAGGAAATCAGTAGCAAATCAGCAACGTCAAGCTTCACATTAACTTCCTGATCA
z600 G&D 3:232
TGGTATCGACACTACGGCATCGATACCAACTCTCGCATATCGTAAGTGTTTACCAGCTCTGATATTCGAGTGAAAATGTGTGCGTGTAAGCG
zeste EMBO 6:791
The asterisk (*) indicates the white promoter has an experimentally confirmed functional, albeit non-consensus, DPE (4 out of 6 match with the DPE functional range set). For the sake of consistency in determining the relative numbers of consensus core promoter elements, we have excluded white from the DPE-containing promoter list and included it here.
Reference key:
DCB is DNA Cellular Biology
Dev Bio is Developmental Biology
EJB is European Journal of Biochemistry
G&D is Genes & Development
JBC is Journal of Biological Chemistry
JCB is Journal of Cell Biology
JMB is Journal of Molecular Biology
JM Evol is Journal of Molecular Evolution
JN is Journal of Neurosciences
MCB is Molecular and Cellular Biology
Mech Dev is Mechanisms of Development
M&GG is Molecular and General Genetics
NAR is Nucleic Acid Resolutions
Nat is Nature