Julian I. SchroederProfessor of Biology, UCSD
Identifying the basic molecular mechanisms by which plants respond to and mount resistance to environmental stresses is fundamental to understanding resistance mechanisms to these “abiotic” stresses in plants and is an important goal for developing future strategies for engineering stress resistance in plants. Several abiotic stress mechanisms that we are characterizing are directly linked to water, including drought stress-induced signal transduction mechanisms, salinity resistance mechanisms and how plants respond to the continuing rise in the atmospheric CO2 concentration.
Our laboratory’s research is directed at the signal transduction mechanisms and pathways that mediate resistance to environmental (“abiotic”) stresses in plants, in particular responses to elevated CO2, drought, salinity stress, and heavy metal stress. These abiotic stresses have substantial negative impacts and reduce global plant growth and biomass production. These environmental stresses are also relevant in reference to climate change and to expanding available arable land to meet the food and energy needs of the growing human population.
Our research is elucidating the molecular and cell biological stress-induced signal transduction cascades in higher plant cells, examining the chain of events by which plant cells respond to elevated CO2, the drought stress hormone abscisic acid and salinity stress to mount specific resistance and adaptation responses. We have developed and adapted interdisciplinary and systems biological approaches to guard cells, which control water loss and CO2 intake in plants and which have become a key model system for understanding dynamic cellular signal transduction and ion channel functions in plants.
Stomatal pores in the epidermis of leaves allow CO2 influx into leaves from the atmosphere and also mediate transpirational water loss of plants (see figure). Two guard cells surround each pore and control the opening and closing of stomata. In guard cells, cell biological, molecular, patch clamp and time-resolved calcium imaging studies on genetic signaling mutants in Arabidopsis are allowing us to identify and characterize stress-induced signal transduction mechanisms and cascades. We are combining these analyses with new genomic, systems, bioinformatic and proteomic approaches towards discovering new signaling mechanisms and principles. We have identified CO2 binding proteins and early CO2 signal transduction mechanisms, including ion channels in guard cells through which elevated CO2 closes stomatal pores. We have recently identified new early signal transduction mechanisms and contributed to the characterization and co-identified receptors for the plant stress hormone abscisic acid and have obtained molecular genetic, cell biological, genomic, biophysical whole plant physiological evidence for new genes and mechanisms in guard cells that reduce water loss of Arabidopsis during drought.
A second effort in the lab focuses on identifying genes that mediate salt (sodium) stress resistance and heavy metal uptake and detoxification in plants. In this research we identified the plant HKT transporter family and showed its central role in mediating salinity resistance in the reference plant, Arabidopsis thaliana. Research on the staple crops rice and wheat is showing that this same HKT transporter mechanism plays a major role in determining salinity resistance. HKT gene-focused molecular breeding efforts are indicating major improvements in yield, illustrating how basic Arabidopsis research is leading to innovation in agriculture.
Our research into heavy metal stress led to the parallel discovery of the genes encoding the central heavy metal detoxification enzymes in plants, phytochelatin synthases. Furthermore recent research has identified the long sought family of transporters that mediate heavy metal accumulation in plant vacuoles. These basic research advances can provide key tools for avoiding toxic heavy metal and arsenic accumulation in edible plant tissues, a problem facing millions of people today leading to cancer and other diseases. Furthermore, these basic research advances can contribute key tools for engineering plants for environmental remediation (bioremediation) by removal of heavy metals from soils.
Members in our lab are being trained in interdisciplinary and systems biological techniques while pursuing individual research projects.
Julian Schroeder is Novartis Chair and Distinguished Professor in the Division of Biological Sciences at the University of California San Diego and is Co-Director of the Center for Food and Fuel for the 21st Century at UCSD. He received his PhD working with Erwin Neher at the Max Planck Institute for Biophysical Chemistry in Göttingen Germany. Julian pioneered characterizations of plant ion channels, which led to models of their unique functions in plant biology. He also pioneered functional characterizations of genes encoding plant ion transport proteins and their roles in stress tolerance. His present research has identified mechanisms and genes that allow plants to withstand drought and salinity stress. His laboratory has discovered CO2-binding proteins and mechanisms that mediate plant responses to the continuing atmospheric CO2 elevation and leaf CO2 concentration changes and has found that these CO2 binding proteins can be used to increase the instantaneous water use efficiency of plants. Julian Schroeder has received awards, including the Presidential Young Investigator Award from NSF, the Charles Albert Shull Award from the American Soc. of Plant Biologists, the DFG Heinz-Maier-Leibnitz Research Prize, the Blasker Award in Environmental Science and Engineering, was named Highly Cited Researcher by the Institute for Scientific Information, received a Feodor-Lynen Fellowship from the Alexander von Humboldt Foundation as a post doctoral scholar and with collaborators shared the Cozzarelli Prize from PNAS (2010) and in a top 10 breakthrough of the year selected by Science (2009). He is a member of the U.S. National Academy of Sciences and is an elected Fellow of the American Association for the Advancement of Sciences. He was Alexander von Humboldt Fellow at the Max Planck Institute in Martinsried Munich and was named Chinese Academy of Sciences International Professor.
Selected Publications:Full Publication List
Li, Z., Waadt, R., Schroeder, J.I. Release of GTP Exchange Factor Mediated Down-Regulation of Abscisic Acid Signal Transduction through ABA-induced Rapid Degradation of RopGEFs. PLoS Biol.14(5):e1002461 (2016).
Stephan, A.B., Kunz, H.H., Yang, E., Schroeder, J.I. Rapid hyperosmotic-induced Ca2+ responses in Arabidopsis thaliana exhibit sensory potentiation and involvement of plastidial KEA transporters. Proc Natl Acad Sci USA 113(35):E5242-9 (2016).
Yazaki, J., Galli, M., Kim, A.Y., Nito, K., Aleman, F., Chang, K.N., Carvunis, A.R., Quan, R., Nguyen, H., Song, L., Alvarez, J.M., Huang, S.C., Ramachandran, N., Gutierrez, R.E., Hill, D.E., Schroeder, J.I., Chory, J., Braun, P., LaBaer, J., Vidal, M., and Ecker, J.R. Mapping Plant Hormone Transcription Factor Interactome Networks Using HALO-TagProtein Arrays. Proc Natl Acad Sci USA 113 (29):E4238-47 (2016).
Wang, C., Hu, H., Qin, X., Zeisem B., Xu, D., Rappel, W.J., Boron, W.F., Schroeder, J.I. Reconstitution of CO2 regulation of SLAC1 anion channel and function of CO2-permeable PIP2;1 aquaporin as carbonic anhydrase 4 interactor. Plant Cell 28(2): 568-82(2016).
Brandt, B., Munemasa, S., Wang, C., Nguyen, D., Yong, T., Yang, P.G., Poretsky, E., Belknap, T.F., Waadt, R., Aleman, F., Schroeder, J.I. Calcium specificity signaling mechanisms in abscisic acid signal transduction in Arabidopsis guard cells. Elife 4:e10328 (2015).
Azoulay-Shemer, T., Palomares, A., Bagheri, A., Israelsson-Nordstrom, M., Engineer, C.B., Barmann, B.O, Stephan, A.B., Schroeder, J.I. Guard cell photosynthesis is critical for stomatal turgor production, yet does not directly mediate CO2- and ABA-induced stomatal closing. Plant Journal 83(4): 567-81 (2015).
Engineer, C.B., Ghassemian, M., Anderson, J.C., Pack, S.C., Hu, H., Schroeder, J.I. Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. Nature 513: 246-250 (2014).
Waadt, R., Hitomi, K., Nishimura, N., Hitomi, C., Adams, S.R., Getzoff, E.D., Schroeder, J.I. FRET-based reporters for the direct visualization of abscisic acid concentration changes and distribution in Arabidopsis. Elife e01739 (2014).
Kunz, H.H., Gierth, M., Herdean, A., Satoh-Cruz, M., Kramer, D.M., Spetea, C., Schroeder. J.I. Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis. PNAS 111: 7480-7485 (2014).
Jones, A.M., Xuan, Y., Xu, M., Wang, R.-S., Ho, C.-H., Lalonde, S., You, C.H., Sardi, M.I., Parsa, S.A., Smith-Valle, E., Su, T., Frazer, K.A., Pilot, G., Pratelli, R., Grossmann, G., Acharya, B.R., Hu, H.-C., Engineer, C., Villiers, F., Ju, C., Takeda, K., Su, Z., Dong, Q., Assmann, S.M., Chen, J., Kwak, J.M., Schroeder, J.I., Albert, P., Rhee, S.Y., Frommer, W.B. Border control - a membrane-linked interactome of Arabidopsis. Science 344: 711-716. (2014).
Hauser, F., Chen, W., Deinlein,
U., Chang, K., Ossowski, S., Fitz, J., Hannon, G.J.,
Schroeder, J.I. A Genomic-Scale Artificial MicroRNA Library as a Tool
Investigate the Functionally Redundant Gene Space in Arabidopsis. Plant
Cell 25: 2848-63 (2013).
Schroeder, J.I., Delhaize, E.,
Frommer, W.B., Guerinot, M.L., Harrison,
M.J., Herrera-Estrella,L., Horie, T., Kochian, L.V., Munns, R.,
Nishizawa, N.K., Tsay, Y.F. & Sanders, D. Using Membrane
Transporters to Improve Crops for Sustainable Food Production. Nature
497: 60-66 (2013).
Kim, T.H., Kunz, H.H.,
Bhattacharjee, S., Hauser, F., Park, J.,
Engineer, C., Liu, A., Ha, T., Parker, J.E., Gassmann, W., Schroeder,
J.I. Natural Variation in Small Molecule-Induced TIR-NB-LRR Signaling
Induces Root Growth Arrest via EDS1- and PAD4-Complexed R Protein VICTR
in Arabidopsis. Plant Cell 24: 5177-5192 (2012).
Brandt, B., Brodsky, D.E., Xue, S., Negi, J., Iba, K., Kangasjärvi, J., Ghassemian, M., Stephan, A.B., Hu, H., Schroeder, J.I. Reconstitution of abscisic acid activation of SLAC1 anion channel by CPK6 and OST1 kinases and branched ABI1 PP2C phosphatase action. Proc Natl Acad Sci USA 109:10593-10598 (2012).
Kim, T.H., Hauser, F., Ha T., Xue S., Böhmer M., Nishimura N., Munemasa S., Hubbard K., Peine N., Lee B.H., Lee S., Robert N., Parker J.E., Schroeder J.I. Chemical genetics reveals negative regulation of abscisic Acid signaling by a plant immune response pathway. Current Biology 21: 990-997 (2011).
Xue, S., Hu, H., Ries, A., Merilo, E., Kollist, H. & Schroeder, J.I. Central functions of bicarbonate in S-type anion channel activation and OST1 protein kinase in CO2 signal transduction in guard cell. EMBO J. 30: 1645-1658 (2011).
Hauser, F., Waadt, R & Schroeder, J.I. Evolution of abscisic acid synthesis and signaling mechanisms. Current Biology 21: R346-355 (2011).
Song, W.Y., Park, J., Mendoza-Cózatl, D.G., Suter-Grotemeyer, M., Shim, D., Hörtensteiner, S., Geisler, M., Weder, B., Rea, P.A., Rentsch, D., Schroeder, J.I., Lee, Y., Martinoia, E. Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters. Proc Natl Acad Sci USA 107:21187-21192 (2010).
Hubbard, K., Nishimura, N.,
Getzoff, E.D. and Schroeder, J.I. Early Abscisic Acid Signal
Transduction Mechanisms. Genes & Development 24: 1695-1708.
Hu., H., Boisson-Dernier, A., Israelsson -Nordström, M., Böhmer, M., Xue, S., Ries, A., Godoski, J., Kuhn, J.M. & Schroeder, J.I. Carbonic Anhydrases are Upstream Regulators of CO2-controlled Stomatal Movements in Guard Cells. Nature Cell Biol. 12: 87-93 (2010).
Mendoza-Cozatl, D.G., Zhai, Z., Jobe, T.O., Akmakjian, G.Z., Song, W.Y., Limbo, O., Russell, M.R., Kozlovskyy, V.I., Martinoia, E., Vatamaniuk, O.K., Russell, P., Schroeder, J.I. Tonoplast-localized Abc2 Transporter Mediates Phytochelatin Accumulation in Vacuoles and Confers Cadmium Tolerance. J. Biol. Chem. (2010).
Kim, T.H., Böhmer, M., Hu, H., Nishimura, N. & Schroeder, J.I. Guard cell signal transduction network; advances in understanding abscisic acid, CO2, and Ca2+ signaling Annual Reviews of Plant Biol. 61: 561-91 (2010).
Nishimura N., Sarkeshik A., Nito K., Park S.Y., Wang A., Carvalho P.C., Lee S., Caddell D.F., Cutler S.R., Chory J., Yates J.R., Schroeder J.I. PYR/PYL/RCAR family members identified as major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis. Plant Journal 61: 290-299 (2010).
Nishimura, N., Hitomi K, Arvai A.S., Rambo R.P., Hitomi C., Cutler S.R., Schroeder J.I., Getzoff E.D. Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science 326:1356-7 (2009).
Park, S.Y., Fung, P., Nishimura, N., Jensen, D.R., Fujii, H., Zhao, Y., Lumba, S., Santiago, J., Rodrigues, A., Chow, T.F., Alfred, S.E., Bonetta, D., Finkelstein, R., Provart, N.J., Desveaux, D., Rodriguez, P.L., McCourt, P., Zhu, J.K., Schroeder, J.I., Volkman, B.F., Cutler, S.R. Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science 324: 1068-1071 (2009).
Siegel, R.S., Xue, S., Murata, Y., Yang, Y., Nishimura, N., Wang, A. & Schroeder, J.I. Calcium elevation-dependent and attenuated resting calcium-dependent abscisic acid induction of stomatal closure and abscisic acid-induced enhancement of calcium sensitivities of S-type anion and inward-rectifying K channels in Arabidopsis guard cells. Plant Journal 59(2): 207-20 (2009).
Ward, J.M., Maser, P., Schroeder, J.I. Plant Ion Channels: Gene Families, Physiology, and Functional Genomics Analyses. Annual Reviews of Physiology 71: (2009).
Vahisalu, T., Kollist, H., Wang, Y.-F., Nishimura, N., Chan, W.-Y., Valerio, G., Lamminmaki, A., Brosche, M., Moldau, H., Desikan, R., Schroeder, J.I., Kangasjarvi, J. SLAC1 is required for plant guard cell S-type anion channel function in stomatal signalling Nature 452:487-91 (2008).
Mendoza-Cozatl DG, Butko E, Springer F, Torpey JW, Komives EA, Kehr J, Schroeder JI. Identification of high levels of phytochelatins, glutathione and cadmium in the phloem sap of Brassica napus. A role for thiol-peptides in the long-distance transport of cadmium and the effect of cadmium on iron translocation. Plant Journal 54: 249-59 (2008).
Boisson-Dernier, A., Frietsch, S., Kim, T.H., Dizon, M.B. & Schroeder, J.I. The peroxin ABSTINENCE BY MUTUAL CONSENT disrupts male-female gametophyte recognition. Current Biology 18: 63-68 (2008).
Yang Y, Costa A, Leonhardt N, Siegel RS, Schroeder JI. Isolation of a strong Arabidopsis guard cell promoter and its potential as a research tool. Plant Methods. 4: 1-15 (2008).
Imaizumi, T., Kay, S., Schroeder, J.I. Daily watch on Metabolism. Science 318: 1730-1731 (2007).
Horie, T., Costa, A., Kim, TH, Han, MH, Horie, R., Leung, HY, Miyao, A., Hirochika, H., An, G. and Schroeder, J.I. Rice OsHKT2;1 transporter mediates large Na+ influx component into K+-starved roots for growth. EMBO J. 26: 3003-3014 (2007).
Mori, I.C., Murata, Y., Yang, Y., Munemasa, S., Wang, Y.F., Andreoli, S., Tiriac, H., Alonso, J.M., Harper, J.F., Ecker, J.R., Kwak, J.M., Schroeder, J.I. CDPKs CPK6 and CPK3 Function in ABA Regulation of Guard Cell S-Type Anion- and Ca(2+)- Permeable Channels and Stomatal Closure. PloS Biol. 4 (2006).
Schroeder, J.I., Nambara, E. A quick release mechanism for abscisic acid. Cell 126: 1023-1025 (2006).
Young, J.J., Mehta, S., Israelsson, M., Godoski, J., Grill, E., Schroeder, J.I. CO2 signaling in guard cells: Calcium sensitivity response modulation, a Ca2+ -independent phase, and CO2 insensitivity of the gca2 mutant. Proc. Natl. Acad. Sci. USA 103: 7506-7511 (2006).
Schroeder, J.I. Physiology: nitrate at the ion exchange. Nature 442: 877-878 (2006).
Hashimoto, M., Negi, J., Young, J., Israelsson, M., Schroeder, J.I., Iba, K. Arabidopsis HT1 kinase controls stomatal movements in response to CO2. Nature Cell Biol. 8: 391-397 (2006).
Sunarpi, Horie, T., Motoda, J., Kubo, M., Yang, H., Yoda, K., Horie, R., Chan, W.Y., Leung, H.Y., Hattori, K., Konomi, M., Osumi, M., Yamagami, M., Schroeder, J.I., Uozumi, N. Enhanced salt tolerance mediated by AtHKT1 transporter-induced Na unloading from xylem vessels to xylem parenchyma cells. Plant J. 44: 928-938 (2005).
Colcombet, J., Boisson-Dernier, A., Ros-Palau, R., Vera, C.E., Schroeder, J.I. Arabidopsis somatic embryogenesis receptor kinases 1 and 2 are essential for tapetum development and microspore maturation. Plant Cell 17: 3350-3361 (2005).
Gierth, M., Mäser, P., Schroeder, J.I. The Potassium Transporter AtHAK5 Functions in K+ Deprivation-Induced High-Affinity K+ Uptake and AKT1 K+ Channel Contribution to K+ Uptake Kinetics in Arabidopsis Roots. Plant Physiology 137: 1105-1114 (2005).
Leonhardt, N., Kwak, J. M., Robert, N., Waner, D., Leonhardt, G. & Schroeder, J. I. Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive ABA hypersensitive Protein Phosphatase 2C mutant. Plant Cell 16: 596-615 (2004).
Mäser, P., Leonhardt, N. & Schroeder, J. I. The Clickable Guard Cell: Electronically Linked Model of Guard Cell Signal Transduction Pathways. The Arabidopsis Book (access: http://www.bioone.org/bioone/?request=get-document&issn=1543-8120&volume=032&issue=01&page=0001). Editors: C. Sommerville and E. Meyerowitz. Publisher: Amer. Soc. Plant Biol., 1-4 (2003).
Lahner, B, J. M. Gong, M. Mahmoudian, E.L. Smith, K.B. Abid, E.E. Rogers, M.L. Guerinot, J.F. Harper, J.M. Ward, L. McIntyre, J.I. Schroeder and D.E. Salt. Genomic scale profiling of nutrient and trace elements in Arabidopsis thaliana. Nature Biotechnology 21: 1215-1221 (2003).
Gong, J-M., D.A. Lee and J.I. Schroeder. Long-distance root-to-shoot transport of phytochelatins and cadmium in Arabidopsis. Proc. Natl. Acad. Sci. USA 100: 10118-10123 (2003).
Kwak, J.M., I.C. Mori, Z-M. Pei, N. Leonhardt, M.A. Torres, J.L. Dangl, R.E. Bloom, S. Bodde, J.D.G. Jones and J.I. Schroeder. NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis. EMBO J. 22: 2623-2633 (2003).
J.M., J-H. Moon, Y. Murata, K. Kuchitsu, N. Leonhardt, A. DeLong and
J.I. Schroeder. Disruption of a guard cell-expressed protein
phosphatase 2A regulatory subunit, RCN1, confers abscisic acid
insensitivity in Arabidopsis. Plant Cell 14:2849-2861 (2002).
Mäser, P., Y. Hosoo, S. Goshima, T. Horie, B. Eckelman, K. Yamada, K. Yoshida, E.P. Bakker, A. Shinmyo, Soiki, J.I. Schroeder, and N. Uozumi. Glycine residues in potassium channel-like selectivity filters determine potassium selectivity in four-loop-per-subunit HKT transporters from plants. Proc. Nat. Acad. Sci. USA, 99:6428-6433 (2002).
Hugouvieux, V., J.M. Kwak and J.I. Schroeder. A mRNA cap binding protein, ABH1, modulates early abscisic acid signal transductuion in Arabidopsis. Cell 106: 477-487 (2001).
Allen, G.J. and J.I. Schroeder. Combining genetics and cell biology to crack the code of plant cell calcium signaling. Science STKE (2001).
Schroeder, J.I., J.M. Kwak. and G.J. Allen. Guard cell abscisic acid signalling and engineering of drought hardiness in plants. Nature 410: 327-330 (2001).
Allen, G.J., S.P. Chu, C.L. Harrington, K. Schumacher, T. Hoffmann, Y.Y. Tang, E. Grill and J.I. Schroeder. A defined range of guard cell calcium oscillation parameters encodes stomatal movements. Nature 411: 1053-1057 (2001).
Allen, G.J., S.P. Chu, K. Schumacher, C.T. Shimazaki, D. Vafeados, A. Kemper, S.D. Hawke, G. Tallman, R.Y. Tsien, J.F. Harper, J. Chory and J.I. Schroeder. Alteration of stimulus specific guard cell calcium oscillations and stomatal closing in Arabidopsis det3 mutant. Science 289: 2338-2342 (2000).
Pei, Z-M., Y. Murata, G. Benning, S. Thomine, B. Klüsener, G. Allen, E. Grill and J.I. Schroeder. Calcium channels activated by hydrogen peroxide mediate abscisic acid signalling in guard cells. Nature 406: 731-734 (2000).
Thomine, S., Wang, R., Ward, J.M., Crawford, N.M., and Schroeder, J.I. Cadmium and iron transport by members of a plant metal transporter family in Arabidopsis with homology to Nramp genes. Proc. Natl. Acad. Sci. USA 97:4991-4996 (2000).
Pei, Z-M., Ghassemian, M., Kwak, C.M., McCourt, P. and Schroeder, J.I. (1998) Role of farnesyltransferase in ABA regulation of guard cell anion channels and plant water loss. Science 282: 287-290.
Clemens, S., Antosiewicz, D.M., Ward, J.M., Schachtman, D.P. and Schroeder, J.I. (1998) The plant cDNA LCT1 mediates the uptake of calcium and cadmium in yeast. Proc. Natl. Acad. Sci. (USA) 95: 12043-12048.
Pei, Z.M., Kuchitsu, K., Ward, J.M., Schwarz, M. and Schroeder, J.I. (1997) Differential abscisic acid regulation of guard cell slow anion channels in Arabidopsis wild-type and abi1 and abi2 mutants. Plant Cell 9:409-423.
Hildebrand, M., Volcani, B.E., Gassmann, W. and Schroeder, J.I. (1997) A gene family of silicon transporters. Nature 385:688-689.
Pei, Z.M., Ward, J.M., Harper, J.F. and Schroeder, J.I. (1996) A novel chloride channel in Vicia faba guard cell vacuoles activated by the serine threonine kinase CDPK. EMBO J. 15:6564-6574.
Rubio, F., Gassmann, W. and Schroeder, J.I. (1995). Sodium-driven potassium uptake by the plant potassium transporter HKT1 and mutations conferring salt tolerance. Science 270:1660-1663.
D.P. and Schroeder, J.I. (1994). Structure and transport mechanism of a
high-affinity K+ uptake transporter from higher plants. Nature
Email Address: email@example.com