Zisoulis DG, Kai ZS, Chang RC, Pasquinelli AE. Auto-regulation of miRNA biogenesis by let-7 and Argonaute. Nature, 2012 Jun 28;486(7404):541-4.

Aalto AP, Pasquinelli AE. Small non-coding RNAs mount a silent revolution in gene expression. Current Opinion in Cell Biology, 2012 Jun;24(3):333-40.

Pasquinelli AE.  The emerging reciprocal relationship between microRNAs and their targets. Nature Reviews Genetics, 2012 Mar 13;13(4):271-82.

Massirer KB, Perez SG, Mondol V, Pasquinelli AE. The miR-35-41 family of microRNAs regulates RNAi sensitivity in Caenorhabditis elegans. PLoS Genetics. 2012 Mar;8(3):e1002536.

Mondol V, Pasquinelli AE. Let’s make it happen:  The role of let-7 microRNA in development. In Eran Hornstein, editors: MicroRNAs in Development, CTDB, UK: Academic Press, 2012, 99:1-30.

Pasquinelli AE.  A team effort blocks the ribosome in its tracks. Nat Struct Mol Biol. 2012 19(2):133-4.

Van Wynsberghe PM, Chan S-P, Slack FJ, Pasquinelli AE. Analysis of microRNA Expression and Function. Methods Cell Biol. 2011;106:219-52. PMID: 22118279

Zisoulis DG, Yeo GW, Pasquinelli AE. Comprehensive identification of miRNA target sites in live animals. Methods Mol Biol. 2011 732:169-85.

Van Wynsberghe PM, Kai ZS, Massirer KB, Burton VH, Yeo GW, Pasquinelli AE. Co-transcriptional association of LIN-28 with let-7 primary transcripts regulates miRNA maturation in C. elegans. Nat Struct Mol Biol. 2011 Mar;18(3):302-8.

Bracht JR, Van Wynsberghe PM, Mondol V, Pasquinelli AE. Regulation of lin-4 miRNA Expression, Organismal Growth and Development by a Conserved RNA Binding Protein in C. elegans. Dev Biol. 2010 Dec 15;348(2):201-21.

Pasquinelli AE. Paring miRNAs through paring. Science. 2010 Jun 18;328(5985):1494-5.

Godshalk SE, Melnik-Martinez KV, Pasquinelli AE, Slack FJ. MicroRNAs and cancer: a meeting summary of the eponymous Keystone Conference. Epigenetics. 2010 Feb;5(2):164-8.

Kai Z, Pasquinelli AE. A genome wide view of hunchback-like-1 targets. Cell Cycle. 2010 Jan 15;9(2):230-1.

Kai ZS, Pasquinelli AE. MicroRNA assassins: factors that regulate the disappearance of miRNAs. Nat Struct Mol Biol. 2010 Jan;17(1):5-10.

Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nat Struct Mol Biol. 2010 17:173-9.

Hinton A, Afrikanova I, Wilson M, King C, Maurer B, Yeo G, Hayek A, Pasquinelli AE. A Distinct MicroRNA Signature for Definitive Endoderm Derived From Human Embryonic Stem Cells. Stem Cells Dev. 2010 19:797-807.

Holtz J, Pasquinelli AE. Uncoupling of lin-14 mRNA and protein repression by nutrient deprivation in Caenorhabditis elegans. RNA. 2009 15:400-5.

Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T. Computational prediction and experimental validation of Ciona intestinalis microRNA genes. BMC Genomics 2007 8:445.

Chendrimada TP, Finn KJ, Ji X, Baillant D, Gregory RI, Liebhaber SA, Pasquinelli AE, Shiekhattar R. MicroRNA silencing through RISC recruitment of eIF6.  Nature 2007 447:823-828.

Pasquinelli AE. Demystifying Small RNA Pathways - A Meeting Review.  Dev Cell. 2006 10:419-424.

Massirer K, Pasquinelli AE. The evolving role of microRNAs in animal gene expression. BioEssays. 2006 28:449-452.

Bagga S, Pasquinelli AE. Identification and analysis of microRNAs. Genet Eng (N Y). 2006 27:1-20.

Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation.  Cell. 2005 122:553-563.

Kim JK, Gabel HW, Kamath RS, Tewari M, Pasquinelli AE, Rual JF, Kennedy S, Dybbs M, Bertin N, Kaplan JM, Vidal M, Ruvkun G. Functional genomic analysis of RNA interference in C. elegans. Science. 2005 308:1164-1167.

Pasquinelli AE, Hunter SE, Bracht J. MicroRNAs:  A Developing Story. Curr Opin Genet Dev. 2005 15:200-205.

Pasquinelli AE. MicroRNAs:  a Small Contribution from Worms.  In RNA Interference Technology: From Basic Science to Drug Development, ed. K Appasani. Cambridge, UK: Cambridge University Press. 2005. p69-83.

Mansfield JH, Harfe BD, Nissen R, Obenauer J, Srineel J, Chaudhuri A, Farzan-Kashani R, Zuker M, Pasquinelli AE, Ruvkun G, Sharp PA, Tabin CJ, McManus MT.  MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression. Nat Genet. 2004 36:1079-1083.

Bracht J, Hunter S, Eachus R, Weeks P, Pasquinelli AE.  Trans-splicing and polyadenylation of let-7 microRNA primary transcripts. RNA. 2004 10:1586-1594.

Pasquinelli AE, McCoy A, Jimenez E, Salo E, Ruvkun G, Martindale MQ, Baguna J. Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: A role in life history evolution? Evol Dev. 2003 5:372-378.

Bashirullah A, Pasquinelli AE, Kiger, AA, Perrimon N, Ruvkun G, Thummel C. Coordinate regulation of small temporal RNAs at the onset of Drosophila metamorphosis. Dev Biol. 2003 259:1-8.

Lin S, Johnson SM, Abraham M, Vella MC, Pasquinelli AE, Gamberi C, Gottlieb E, Slack F. The C. elegans hunchback homologue hbl-1, controls temporal patterning and is a probable microRNA target. Dev Cell. 2003 4:639-650.

Pasquinelli AE. MicroRNAs:  Deviants No Longer. Trends Genet.  2002 18:171-173.

Pasquinelli AE, Ruvkun G. Control of Developmental Timing by MicroRNAs and Their Targets. Annu Rev Cell Dev Biol. 2002 18:495-513.

Hutvagner G, McLachlan J, Pasquinelli AE, Balint E, Tuschl T, Zamore PD. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science. 2001 293:834-838.

Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, Mello CC. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell. 2001 106:23-34.

Pierce SB, Costa M, Wisotzkey R, Devadhar S, Homburger SA, Buchman AR, Ferguson KC, Heller J, Platt DM, Pasquinelli AE, Liu LX, Doberstein SK, Ruvkun G. Regulation of DAF-2 receptor signaling by human insulin and ins-1, a member of the unusually large and diverse C. elegans insulin gene family. Genes Dev. 2001 15:672-686.

Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B, Muller P, Spring J, Srinivasan A, Fishman M, Finnerty J, Corbo J, Levine M, Leahy P, Davidson E, Ruvkun G. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature. 2000 408:86-89.

Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, Rougvie AE, Horvitz HR, Ruvkun G. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature. 2000 403:901-906.

Pasquinelli AE, Ernst RK, Lund E, Grimm C, Zapp ML, Rekosh D, Hammarskjöld ML, Dahlberg JE. The constitutive transport element (CTE) of Mason-Pfizer monkey virus (MPMV) accesses a cellular mRNA export pathway. EMBO J. 1997 16:7500-7510.

Pasquinelli AE, Powers MA, Lund E, Forbes D, Dahlberg JE. Inhibition of mRNA export in vertebrate cells by nuclear export signal conjugates. Proc Natl Acad Sci USA. 1997 94:14394-14399.

Pasquinelli AE, Dahlberg JE, Lund E. Reverse 5' caps in RNAs made in vitro by phage RNA polymerases. RNA. 1995 1:957-967.