University of California - San Diego
The Ghosh Labhome page banner
Software
PEOPLE
PROJECTS
PAPERS
PROTOCOLS
IMAGES
VIDEOS
SOFTWARE
CONTACT US
PHOTO ALBUM
HOME

Ghosh Lab Software

The following plugins were developed for use with ImageJ, which is freely available at http://rsb.info.nih.gov/ij/. To install a plugin, download the plugin (.class) files and place them in the “plugins” folder inside the ImageJ application folder. The next time ImageJ starts, the new plugin will be added to the “Plugins” menu. Optionally, the source code (.java) files for each plugin may also be downloaded and placed in the same folder, allowing the user to inspect or make changes to the plugin as desired.

Additional information about each plugin can be accessed in ImageJ by holding down the “Shift” key and selecting the plugin from the “Plugins” menu.

  Plugin File Source Code Documentation
Sholl Analysis Plugin (v1.0)
Performs Sholl analysis on an image of a neuron.
ShollAnalysis_.class ShollAnalysis_.java ShollAnalysis.pdf

EdgeFitter Plugin (v1.0)
Fits a line selection to the edges of an object in an image.

EdgeFitter_.class EdgeFitter_.java EdgeFitter.pdf
       
       


People | Projects | Papers | Protocols | Images | Videos | Contact Us | Photo Album | Home

© 2005 UCSD The Ghosh Lab

Site design: Academic Web Pages